Student Seminar in Systems Biology at the MDC

2021

28 May

• Leo Epstein, Harrington lab: "Detection and tracking to analyze endothelial migration and protein colocalization"
• Julia Markowski, Schwarz lab: "Towards haplotype-specific chromatin contact maps from GAM"
• Lisa Emmenegger, Rajewsky lab: ​​​​​"MicroRNAs function in viral infections: an optogenetic-based DICER perturbation"

7 May

• Miriam Faxel (Zinzen lab):"Reconstruction of regulatory networks driving patterned expression in the Drosophila embryo based on spatially resolved single-cell sequencing data"
• Simone Del Giudice (Landthaler lab): "Cellular interactions and transcriptional dynamics in cancer and invertebrate development"
• Fearghal Donaghy (Haghverdi lab): "Fine-tuning RNA Velocity"

30 Apr 2021

• Mirjam van Bentum (Selbach lab): "Profiling cellular signalling by targeted phoshoproteomics”
• Iris Marchal (Tursun lab): "Characterization of the histone chaperone FACT as a safeguard of cellular identity in C. elegans"

 16 Apr 2021

• Mariam Hammoud (Ohler lab): "Transcriptional regulatory dynamics during zebrafish embryonic development"
• Stefan Stefanov (Meyer lab): "The advantages of full circRNA sequence knowledge in determining functional associations"
• Artem Baranovskii (Chekulaeva lab): "mRNA stability as a determinant of mRNA's subcellular localization in neurons"

5 Mar 2021 (Virtual Meeting)

• Erik Becher (Chekulaeva lab, BIMSB): "Modeling amyotrophic lateral sclerosis: generating functional motoneurons from patient-derived stem cells"
• Jonas Brandenburg (Landthaler lab, BIMSB): "Dynamics of gene regulatory element usage across early sea urchin development"
• Dominika Vojtasova (Pombo lab, BIMSB): "Effects of Shank3 and sleep deprivation on genome architecture in the mouse hippocampus"

19 Feb 2021 (Virtual Meeting)

• Teresa Melder (Selbach lab, MDC): Development of a Cellulose-based High-throughput Screen Targeting the Interaction Landscape of Pharmaceutical Compounds Applying Shotgun Proteomics
• Remo Monti (Ohler lab, BIMSB): Identifying key metabolic regulators from large exome sequencing data using functionally informed kernel-based association tests

Jan 22 2021 (Virtual Meeting)

• Lorena Sofia Lopez Zepeda (Ohler lab, BIMSB): TBA
• Trendelina Rrustemi (Selbach lab, BIMSB): TBA
• Robert Bücking (Meyer lab, BIMSB): Prediction of RNA-RNA interactions in phage infected bacteria

Feb 5 2021 (Virtual Meeting)

• Jonas Peters (Landthaler lab, BIMSB): How individual eIF4F proteins shape the translation profile
• Irene Mota Gomez Argente (Lupianez lab, BIMSB):3D-Chromatin dynamics during mammalian sex determination

Jan 22 2021 (Virtual Meeting)

• Lorena Sofia Lopez Zepeda (Ohler lab, BIMSB):Understanding gene regulation using CRISPR Screens
• Trendelina Rrustemi (Selbach lab, BIMSB):Investigating mutated phosphorylation sites within intrinsically disordered regions using a peptide based interaction screen
• Robert Bücking (Meyer lab, BIMSB):Prediction of RNA-RNA interactions in phage infected bacteria

Jan 8 2021(Virtual Meeting)

• Maria Stella de Biase (Schwarz lab, BIMSB): Nasal gene expression provides insights into smoking injury response and disease status

2020

Dec 9 2020 (Virtual Meeting)

• Nina Mitic (Junker lab, BIMSB): Adult neurogenesis in the zebrafish brain at single cell resolution
• Chiara Anania (Lupianez lab, BIMSB): In vivo dissection of a multi-CTCF element reveals developmental principles of chromatin boundary function

Nov 13 2020 (Virtual Meeting)

• Samantha Mendonsa (AG Chekulaeva)
• Izabela Harabula (AG Pombo)

Oct 30 (Virtual Meeting)

• Ismail Özcan (AG Tursun): Genetic Dissection of Direct Cellular Reprogramming in vivo
• Nora Fresmann (AG Junker): Dissecting cell type composition and cell lineages in zebrafish models of neuroblastoma

Oct 16 (Virtual Meeting)

• Che-Wei Hsu (AG Ohler)
• Tzu-Ting Wei (AG Schwarz)
• Nicolai von Kügelgen (AG Chekulaeva)

Sep 18 (Virtual Meeting)

• Dominik Szabo (AG Pombo)
• Anna Monaco (AG Zinzen)
• Marina Petkovic (AG Schwarz)

Sept 4 (Virtual Meeting)

• Haiyue Liu (AG Rajewsky)
• Mareike Simon (AG Wolf)
• Somesh Sai (AG Sauer)

July 24 (Virtual Meeting)

• Martin Forbes (AG Kempa)
• Gülkiz Baytek (AG Tursun lab)

June 26 (Virtual Meeting)

• Seung Koon Kim (AG Rajewsky)
• Thomas Sparks (AG Pombo lab)

June 12 (Virtual Meeting)

• Ana Costa Veloso (AG Zinzen lab)
• Aristotelis Misios (AG Rajewsky)

May 29 (Virtual Meeting)

• Anna Vlot (AG Ohler)
• Gulinuer Yimingjiang (AG Chekulaeva)

May 15 (Virtual Meeting)

• Cledi Cerda-Jara (AG Rajewsky)
• Friedrich Preußer (AG Preibisch)

Apr 17 (Virtual Meeting)

• Gaurav Jumde (AG Junker)
• Eelco Meerdink (AG Ohler)
• Julia Markowski (AG Schwarz)

Apr 3 (Virtual Meeting)

• Ella Bahry (AG Preibisch)
• Martin Burkert (AG Ohler)

Mar 3

• Carlos Vieira e Vieira (AG Selbach)
• Anika Neuschulz (AG Junker)

Feb 21

• Sayaka Dantsuji (AG Chekulaeva)
• Jonathan Alles (AG Rajewsky)

Feb 7

• Bo Hu (AG Junker)

Jan 24

• Gesa Loof (AG Pombo)
• Wai Yee (Vicky) Chung (AG Lupianez) 
• Silvia Carvalho (AG Pombo) 

Jan 10

• Liene Astica (AG Lupianez/Zinzen)
• Karoline Holler (AG Junker)

2019

Dec 13

• Nida ul Fatima (AG Tursun)
• Safak Bayram (AG Kempa) 

Nov 15

• Stefan Stefanov (AG Meyer)
• Remo Monti (AG Ohler)

Nov 1

• Selman Bulut (AG Tursun)
• Miriam van Bentum (AG Selbach)

Oct 18

• Katarzyna Wreczycka (AG Akalin)
• Peter Jonas (AG Landthaler)
• Iris Marchal (AG Tursun)

Sept 6

• Teresa Melder (AG Selbach)
• Orsalia Hazapis (AG Landthaler-Ohler)
• Lorena Lopez Zepeda (AG Ohler lab)

July 12

• Nina Mitic (AG Junker)
• Maria Stella de Biase (AG Schwarz) 
• Irene Mota Gomez-Argente (AG Lupianez)

June 28

• Roberto Arsie (AG Landthaler)

June 14

• Ruben Lopes Pereira Abreu (AG Landthaler)
• Jonas Brandenburg (Garfield lab, IRI Life Sciences)

May 17

• Henriette Miko (AG Ohler)​
• ​​Izabela Harabula (AG Pombo)
• Chiara Anania (AG Lupianez)

Apr 18

• Laura Breimann (AG Preibisch)
• Gülkiz Baytek (AG Tursun)

Mar 22

• Samantha Mendosa (AG Chekulaeva)
• Ismail Özcan (AG Tursun)

Feb 8

• Rieke Kempfer (AG Pombo)
• Nicolai von Kügelgen (AG Chekulaeva)
• Ana Christina Costa Veloso (AG Zinzen)

Jan 25

• Aristotelis Misios (AG Rajewsky)
• Martin Forbes (AG Kempa)
• Thomas Sparks (AG Pombo)

Jan 11

• Jonathan Fröhlich (AG Rajewsky) 
• Ana Miguel Fernandes (AG Pombo)

2018

Dec 14

• Haiyue Liu (AG Rajewsky) 
• Camilla Ciolli Mattioli (AG Chekulaeva)

Nov 30

• Marco Uhrig (AG Rajewsky) 
• Marwan Zouinkhi (AG Preibisch)

Nov 16

• Tamas Sztanka-Toth (AG Rajewsky)
• Seung Joon Kim (AG Rajewsky)
• Friedrich Preußer (AG Preibisch)

Nov 2

• Asija Diag (AG Rajewsky)
• Jonathan Alles (AG Rajewsky)

Oct 5

• Martin Burkert (AG Ohler)
• Ulrike Zinnall (AG Landthaler)

Sept 7

• Birte Arlt (AG Kempa)
• Gulinuer Yimingjiang (AG Chekulaeva)
• Oscar Arturo Migueles Lozano (AG Wolf)

July 27

• Marina Petkovic (AG Schwarz)
• Nida ul Fatima (AG Tursun)
• Selman Bulut (AG Tursun)

July 6

• Gesa Loof (AG Pombo)
• Ella Bahry (AG Preibisch)

June 15

• Bo Hu (AG Junker)
• Carlos Vieira (AG Selbach)
• Mareike Simon (AG Wolf)

June 1

• Jonathan Ronen (AG Akalin)

May 18

• Philipp Wahle (AG Zinzen)
• Petar Glazar (AG N Rajewsky)

Apr 20

• Julia Löffler (AG Kempa)
• Lorena Sofia Lopez Zepeda (AG Ohler)
• Alexander Gosdschan (AG Akalin/Tursun) 

Apr 6

• Katarzyna Wreczycka (AG Akalin)
• Roberto Arsie (AG Landthaler)

Mar 23

• Karoline Holler (AG Junker)
• Boris Bogdanow (AG Selbach)

Mar 9

• Selman Bulut (AG Tursun)
• Stella de Biase (AG Schwarz)
• Jonas Peters (AG Landthaler)

Feb 28

• Nicolai Kastelic (AG Landthaler)
• Giulia Caglio (AG Pombo)

Feb 9

• Alexander Glahs (AG Zinzen)
• Marcel Schilling (AG N Rajewsky)

Jan 26

• Henriette Miko (AG Ohler)
• Gülkiz Baytek (AG Tursun & AG Mertins)
• Orsalia Hazapis (AG Landthaler)